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Generative AI

Revolutionizing Agriculture: Disease Detection with Generative AI on Databricks

Dr. Jagreet Kaur Gill | 02 April 2024

Generative AI on Databricks: Disease Detection & Synthetic Image Training

Introduction to Disease Detection in Agriculture and Its Importance

Disease detection in agriculture is a critical component of crop management and food security. It involves the identification, monitoring, and management of diseases that affect crops and other agricultural commodities. Early detection is crucial to prevent the increase in the spread of diseases, minimize crop losses and ensure the production of safe food. It is essential to carry these out even in remote places where plant pathology specialists do not always have the reach or when needed. This process is important due to the following reasons - 
Plant diseases can significantly reduce crop yields and quality. Early detection allows farmers to implement timely control measures to prevent further spread and minimize losses.  
Agriculture is the only source of food for the global population. Disease outbreaks can threaten food security by reducing crop productivity and availability.  
Some diseases can have detrimental effects on the ecology, such as the contamination of soil and water sources or the destruction of natural habitats. Early detection and intervention can help minimize these environmental impacts.  
Disease detection and management strategies can help mitigate economic losses and protect the livelihoods of farmers.  
Disease detection is essential for sustainable agriculture practices. By identifying diseases early, farmers can reduce reliance on chemical pesticides and adopt more environmentally friendly management practices. 
 
Disease detection is done in agriculture mostly by visual inspection and diagnostic tests. Nowadays, a technique that is becoming widely used is data analytics and AI for large volumes of data that are gathered from sensors, on-farm monitoring systems, satellite imagery, weather stations, and the patterns associated with them. This process allows for faster, more precise, real-time recommendations for targeted interventions and optimizing resources.

Utilizing Databricks for Agricultural Data Analysis and Processing

Databricks with its scalable data processing capabilities and advanced analytics tools, can revolutionize agricultural data analysis. By leveraging Databricks, agricultural stakeholders can efficiently process vast amounts of data from various sources, such as sensors, satellite imagery, and weather stations. Databricks' integration with machine learning libraries enables predictive modelling for crop health, yield forecasting, and disease detection. 
"Dolly LLM" (Large Language Models) is an open-source approach in Gen AI allowing for its users to tailor by selecting and/or fine-tuning their models for their specific use case. Agriculture could be one such use case where AI integration using Databricks could have major benefits like those mentioned below -

Crop Yield Prediction

By using historical data on weather patterns, soil conditions, crop types, and management practices, an ML model can be trained to predict crop yields for future seasons.  
The model can analyze factors such as temperature, rainfall, soil pH, nutrient levels, and pest/disease incidence to forecast potential crop yields.  
Furthermore, agricultural insurers and commodity traders can use yield predictions to assess risk and make investment decisions.

Pest and Disease Detection

Machine learning models are trained to analyze images of crops captured by drones or sensors to detect signs of pest infestation or disease.  
These models can identify patterns and symptoms associated with specific pests or diseases, allowing farmers to take targeted action to mitigate the spread and minimize crop losses.  
Early detection of pests and plant diseases can help farmers implement timely interventions, such as adjusting irrigation schedules, applying pesticides, or deploying biological control methods.

Soil Health Assessment

Models can analyze soil data, including nutrient levels, organic matter content, and soil texture, to assess soil health and fertility.  
By understanding soil characteristics, farmers can optimize fertilizer applications, select appropriate crop varieties, and implement soil conservation practices to improve long-term productivity and sustainability.

Market Forecasting and Decision-Making

Machine learning algorithms can analyze market trends, commodity prices, supply chain dynamics, and geopolitical factors to forecast future market conditions.  
Farmers can use these insights to make strategic decisions regarding crop selection, storage, pricing, and marketing strategies to maximize profitability and minimize risk. 
 
Databricks unifies the AI lifecycle of data collection and preparation, cleaning and processing, then model training, and finally, providing valuable insights and predictions to cultivators so that they can make informed decisions regarding planting schedules, irrigation strategies, fertilizer applications, and pest control measures. 
Farmers can use a user-friendly application to take pictures of their crops or soil directly from their fields. This data can be sent to backend servers based on ML models deployed through Databricks. These models are based on foundation models provided by Databricks itself and pre-trained for evaluation of soil or plant conditions through image recognition and provide for evaluation results which would contain an instant diagnosis of the disease that the plant is facing and also include a report of the overall health of the crops. 
Databricks has horizontal scaling, which would allow the application backend to handle increased workload during peak season and also downsize compute resources during off-seasons. Databricks also has security features and compliance controls to safeguard sensitive agricultural data or produce reports.

Understanding Generative AI for Synthetic Image Generation

Generative AI can be harnessed for synthetic data generation in the form of images, which can subsequently be utilized for model training in various domains like computer vision, medical imaging, and agricultural analysis. Here is a simplified process outlining how Generative AI can be employed for this purpose:

Data Collection and Preprocessing

Collect a diverse set of images relevant to the domain of interest. For instance, these images might include different plant disease symptoms, crop types, soil conditions, and environmental factors.  
Preprocess the collected images to ensure uniformity in terms of size, resolution, and colour space. This step helps facilitate the training process and ensures consistency in the generated synthetic images.

Generative Adversarial Network (GAN) Training

Utilise Generative Adversarial Networks (GANs), a class of deep learning models specifically designed for generating synthetic data.  
Train the GAN model using the preprocessed dataset of real images as the ground truth. The GAN consists of two neural networks: a generator and a discriminator.  
The generator network learns to generate synthetic images that closely resemble the real images in the dataset, while the discriminator network learns to distinguish between real and synthetic images.  
Through an adversarial training process, the generator network improves its ability to generate high-quality synthetic images. The synthetic images that are produced by this process are indistinguishable from real ones.

Synthetic Image Generation

Once the GAN model is trained, use the generator network to generate synthetic images.  
The generator takes random noise or seed vectors as input and generates images based on the patterns and features learned during the training process.  
By adjusting the input noise vectors and controlling certain parameters, users can influence the characteristics and attributes of the generated images, such as crop type, soil texture, lighting conditions, and other environmental factors.

Data Augmentation and Balancing

Synthetic images can be used to augment the existing dataset, thereby increasing its size and diversity.  
Additionally, synthetic images can help address class imbalances in the dataset by generating samples for underrepresented classes or rare scenarios.  
Data augmentation techniques such as rotation, scaling, flipping, and colour jittering can further enhance the variability of the synthetic images.

Model Training and Evaluation

Use the combined dataset of real and synthetic images to train machine learning or deep learning models for specific tasks such as object detection, classification, segmentation, or anomaly detection.  
Evaluate the performance of the trained models on validation and test datasets to assess their accuracy, robustness, and generalization capabilities.  
Iteratively refine the training process based on the model's performance and feedback from validation results.

Understanding-Generative-AI-for-Synthetic-Image-Generation

Evaluating Model Performance and Accuracy in Disease Detection

Evaluating Model accuracy in disease detection is critical to correctly identify and classify diseases. Below is how we use the Confusion Matrix to assess model accuracy - 
Confusion Matrix is a widely used tool in the field of AI that is used to determine the true positives (TP), true negatives (TN), false positives (FP), and false negatives (FN) produced by any model.  
Using the Confusion Matrix, we can derive vital metrics such as precision, recall, accuracy, and F1 score to quantify the model's performance. 
Precision is the measurement of the proportion of true positive predictions among all positive predictions made by the model. It is provided by the below formula. 

Recall, also known as sensitivity, is used to calculate the proportion of true positive predictions among all the actual positive instances in a dataset. It is provided by the below formula. 

Accuracy is the measurement of the proportion of correctly classified instances (both true positives and true negatives) among all instances in the dataset. It is calculated by the below formula. 


F1 score provides a single metric that combines both precision and recall finding a model's accuracy. It is particularly useful when classes are imbalanced or when there is an uneven distribution between false positives and false negatives. It is calculated as below. 

The Receiver Operating Characteristic (ROC) curve shows how a model would perform when used with different decision thresholds. It contrasts the true positive rate (recall) with the false positive rate (1 — specificity) at varying threshold levels. The Area Under the ROC Curve (AUC) serves as a measure of the model's overall performance. A higher AUC indicates a superior discriminatory ability between the two classes. 
 
However, it doesn't stop here. We must seek feedback and evaluation from domain experts like agronomists or plant pathologists to validate the model's predictions and assess its practical utility in real-world scenarios. Furthermore, interpretation of the predictions made by the model to understand its decision-making process and identify potential biases or errors is crucial for the safe public release of such products.

Real-world Applications and Success Stories of Disease Detection in Agriculture

There are numerous real-world applications for disease detection in agriculture. Some of the use cases are plant pathology and disease management, precision agriculture, digital plant pathology platforms, crop monitoring and surveillance, pest management, crop breeding and genetic resistance. 
The primary objective is to alleviate the challenges faced by farmers in remote regions, where access to plant health specialists is limited, and the services provided are often exorbitantly expensive. As a result, farmers in these remote areas struggle to effectively address disease outbreaks, leading to reduced crop yields and economic losses. By developing innovative technologies and solutions for disease detection in agriculture, we aim to empower farmers in remote areas with accessible, affordable, and user-friendly tools that enable them to identify and manage plant diseases independently. These solutions leverage advancements in artificial intelligence, mobile technology, and remote sensing to provide farmers with accurate and timely information about crop health, disease risks, and management strategies. 
Agriculture disease detection using Gen AI, which has been trained in the real world, like synthetic data, has been tried and successfully implemented by many educational and research institutes as well as commercial players such as Plantix and Agrio.